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scSidekick 1.2.0

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Reference
- Setup
- 01 - Getting Started
- 02 - Dimensionality Reduction
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- Visualization
- 03 - UMAP Visualization
- 04 - Feature Expression
- 05 - Heatmaps & Dot Plots
- 13 - Metadata & Composition
- 16 - Co-expression Analysis
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- Analysis
- 06 - Cell Annotation
- 07 - Spatial Transcriptomics
- 08 - Pathway: RunGSEA
- 09 - Pathway: Pseudobulk GSEA
- 10 - Pathway: Single-Cell & Enrichment
- 11 - Cell-Cell Communication
- 14 - Large Datasets
- 15 - Survival Analysis
- 17 - Copy Number Variation
- 18 - Gene Expression Programs (cNMF)
- 19 - Upstream Regulator Analysis
- 20 - Pseudotime & Trajectory Analysis
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- Reporting
- 12 - Reporting & Utilities
- 21 - AskSidekick (AI Assistant)
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- Examples
- Full scRNA-seq Workflow
Changelog

License

YEAR: 2026
COPYRIGHT HOLDER: Nourhan Abdelfattah

Developed by Nourhan Abdelfattah.

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